FastQCFastQC Report
Wed 31 May 2023
EGAF00007935578

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935578
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448986
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12380.27573242818261595No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11750.2617008102702534No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11240.2503418814840552No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8360.18619734245611222No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA6740.1501160392528943No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5920.13185266355743833No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5680.12650728530510974No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5670.12628456121126272No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4740.10557122048348946No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)