FastQCFastQC Report
Wed 31 May 2023
EGAF00007935579

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935579
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448986
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36510.8131656666354853No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25980.5786371958145688No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12350.27506425590107486No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11740.2614780861764064No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11150.24833736463943196No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6970.15523869341137586No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6590.14677517784518893No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6020.13407990449590856No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5020.11180749511120615No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4780.10646211685887755No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)