FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476470
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12570.26381514051251914No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12260.25730895964069095No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11990.2516422859781309No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8570.17986441958570318No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7150.15006191365668353No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6020.12634583499485802No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5810.12193842214620017No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5470.11480261086742082No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5100.10703716918169036No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG4790.10053098830986211No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)