FastQCFastQC Report
Sun 21 May 2023
EGAF00007935581

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935581
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476470
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA27580.578840220790396No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12910.2709509517912985No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12800.2686423069658111No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11570.24282746028081517No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8310.17440762272546018No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7540.15824710894704808No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7280.15279031208680505No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6090.1278149726110773No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5240.10997544441412892No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5190.1089260604025437No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)