FastQCFastQC Report
Sun 21 May 2023
EGAF00007935583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451583
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36240.8025102805021447No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25460.5637944741055354No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12270.271710848282597No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11940.2644032215561702No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9960.22055746119760933No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6940.15368160448909723No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG6830.15124572891362162No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5600.1240082111151217No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5390.11935790319830464No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5260.11647914115456073No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)