FastQCFastQC Report
Sun 21 May 2023
EGAF00007935585

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935585
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393653
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29110.7394837585386114No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15930.4046711189804218No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8350.21211574660932345No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7400.18798281735437047No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6860.17426515230418668No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6330.16080151808826557No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6020.152926562226123No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5420.13768471217036324No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5410.1374306813361006No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5200.13209603381658466No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5170.13133394131379666No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4420.11228162874409697No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)