FastQCFastQC Report
Sun 21 May 2023
EGAF00007935589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences397115
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29240.7363106404945671No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15920.4008914294347985No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8420.21202926104528916No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7580.1908766981856641No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7360.18533674124623847No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6940.17476045981642596No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5760.14504614532314317No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5660.1425279830779497No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5630.14177253440439166No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5500.1384989234856402No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5190.13069262052554045No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4620.11633909572793776No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)