FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935744

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935744
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495965
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47230.9522849394614539No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38760.7815067595495649No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20490.41313399130987066No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15260.3076830018247255No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14780.298004899539282No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12740.256872964826147No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9450.19053763874466947No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8850.17844001088786507No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8590.17319770548324984No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC7210.14537316141259968No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6780.13670319478188986No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6650.13408204207958221No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6600.13307390642484854No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5520.11129817628260058No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5460.11008841349692015No Hit
CGCAACTACACTCCGACCCCGCCACCGGTGT5460.11008841349692015No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)