FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935746

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935746
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499983
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA23830.47661620495096835No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18400.3680125124254225No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11640.23280791546912596No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11070.22140752785594708No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10690.21380726944716122No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10040.20080682743213268No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9780.1956066506261213No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9370.18740637181664177No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8700.17400591620115083No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8530.1706058005972203No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8220.16440558979005288No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7800.1560053041803421No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7020.14040477376230792No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6950.13900472616068948No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6610.1322044949528284No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5250.10500357012138413No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5180.10360352251976568No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)