FastQCFastQC Report
Sun 21 May 2023
EGAF00007935750

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935750
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490217
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44590.9095971783924262No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25750.5252775811528364No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18010.3673883198665081No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT14140.28844368922334396No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT13890.28334390688205424No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11430.2331620486437639No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10940.22316647525483613No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10040.20480725882619327No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9580.19542365931822028No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA9110.1858360685165957No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG9000.18359216428642824No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8700.17747242547688064No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8350.1703327301990751No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC7910.16135711327840527No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7170.14626175754818782No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC7160.14605776625453626No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6990.14258991426245926No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6840.1395300448576855No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6330.12912648888145456No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6300.12851451500049976No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6260.12769854982589343No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6140.12525065430207438No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5610.11443911573854026No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5360.10933933339725062No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4930.10056770777023237No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)