FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935752

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935752
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485718
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47950.9871983331892167No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45100.9285223112999724No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC28750.5919072383564126No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20070.41320272256741564No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16040.33023276880823854No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13910.2863801629752243No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12190.25096866906311893No Hit
TCCTACACCAACGGCAAACTGACTATCACCC11700.2408805109137401No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11300.23264527977139No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10760.22152771772921734No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10710.2204983138364236No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG10220.21041015568704474No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9760.20093963987334212No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG8840.18199860824593694No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8760.18035156201746694No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8610.17726335033908563No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8610.17726335033908563No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA8340.17170456931799935No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8230.16943988075385305No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8220.1692339999752943No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7350.15132237224068287No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7260.1494694452336541No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6600.13588131384877647No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6540.13464602917742394No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6340.1305284136062489No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6330.13032253282769013No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA6110.1257931556993976No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC6110.1257931556993976No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6100.12558727492083885No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6020.12394022869236883No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5920.12188142090678131No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5870.12085201701398753No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5620.11570499755001874No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5240.10788152796478616No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4950.10191098538658233No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)