FastQCFastQC Report
Sun 21 May 2023
EGAF00007935754

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935754
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470641
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34940.7423917593239858No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24570.5220539646992082No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23720.503993489729964No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17950.38139473611521313No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17310.3677962608442528No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12650.26878236277757356No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11720.24902207839945945No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11490.24413512634895812No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10810.22968674637356287No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9280.19717789142892356No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9220.195903034372271No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9120.1937782726111835No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8440.17932989263578822No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8360.17763008322691817No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7620.16190684619487042No Hit
AACGTAACCACCAACCAGGACGGCACCGTCT7120.15128303738943272No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG6880.14618360916282264No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6480.13768456211847246No Hit
GGTCAAGACGTTGACGGCGTGGTCAGCCTGC6450.1370471335901462No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6230.13237265771575363No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6180.13131027683520985No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5380.11431218274650956No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5360.11388723039429205No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5340.11346227804207452No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5090.1081503736393557No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4810.10220104070831058No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA4710.10007627894722305No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)