FastQCFastQC Report
Wed 31 May 2023
EGAF00007935755

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935755
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501292
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT31000.6184020491051123No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT21350.42589947575465No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20790.4147283419643641No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT19780.39458040423545554No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18690.37283659025079197No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18130.3616654564605061No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16220.3235639108543523No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13460.2685061800308004No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13340.26611236564716767No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10540.21025669669573818No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG10440.2082618513760443No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10050.20048195462923804No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT10030.2000829855652993No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9830.19609329492591143No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9600.19150515069061544No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9570.19090669709470728No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCTGCT9010.17973556330442136No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8830.17614484172897232No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG8740.17434948094124783No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8630.1721551510895845No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT8540.17035979030186No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8110.16178195542717616No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7810.15579741946809444No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG7150.14263144035811462No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7060.14083607957039013No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7000.13963917237857376No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC6810.13584896627115534No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6780.13525051267524715No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT6520.130063914844043No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6420.12806906952434907No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6340.12647319326859396No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6320.12607422420465517No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5970.11909226558572648No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5880.11729690479800195No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5670.11310772962664474No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5360.10692370913559363No Hit
TTGACCACGCTGCTGCGGCTGCTGCGGTTCTTCGAAAGTGCTCG5320.10612577100771606No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5260.10492886381589972No Hit
TTCTGCGGAGTTCGGTACGATTTCCAGCTGCGGAACTTTATATT5220.10413092568802215No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA5090.10153762677242006No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT5050.10073968864454251No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)