FastQCFastQC Report
Wed 31 May 2023
EGAF00007935756

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935756
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501292
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT47400.9455566815349138No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT30960.6176041109772349No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30270.6038396782713469No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22500.44884019693113No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG21400.4268968984144969No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA20420.4073474142814966No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18990.3788211262098737No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13030.2599283451561166No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11870.23678813944766725No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11700.23339690240418756No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11440.2282103045729834No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG11340.22621545925328948No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10920.21783710891057506No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10580.21105463482361578No Hit
TCCTACACCAACGGCAAACTGACTATCACCC10410.20766339778013612No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9920.19788865571363595No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9610.19170463522258485No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG9570.19090669709470728No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG9520.1899092744348603No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT9030.18013453236836016No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8890.1773417489207887No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8550.17055927483382938No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7870.15699432665991078No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7800.15559793493612506No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7750.15460051227627808No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7480.14921442991310455No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7350.14662113099750246No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7330.14622216193356366No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT7060.14083607957039013No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG7000.13963917237857376No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG6930.138242780654788No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT6760.13485154361130838No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC6170.1230819562251143No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6120.12208453356526736No Hit
CTGTCCCGTTGCACCCTGAACCGCAACGCAC5650.11270876056270597No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA5520.11011546164710387No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5370.10712319366756302No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5250.10472937928393032No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5180.10333298756014458No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)