FastQCFastQC Report
Sun 21 May 2023
EGAF00007935758

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935758
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492599
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA82091.666467045203096No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA39480.8014632591621176No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC36960.7503060298538974No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA36350.7379227322832568No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG34530.7009758444495421No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG32830.6664650151543142No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT32160.6528636883144302No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC21230.43097935643393515No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA19220.39017537591428325No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18780.3812431612731654No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA15690.3185146539071334No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT14190.28806392217604987No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG12560.2549741270282725No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG10360.21031305382268337No Hit
GAATGCGACAACTATCGCCAGGAATACGATA9340.1896065562455466No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT9330.18940355136733936No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9220.1871704977070599No Hit
CAGTCCATTGTAAACCGTACTGACCTGGATC7490.15205065377721028No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG7160.1453514927963719No Hit
CTGGAAGAGGTCATCGTAGAAAAAACCAAAC6530.13256218546931683No Hit
CCGCGTGTCCTGAGCAACTCCGGTTGGGGTC5840.11855484887301841No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5770.11713381472556786No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5670.11510376594349563No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC5410.10982563911010781No Hit
TACGCCGACGGTACCATTAGCTCTATCCAGC5400.10962263423190059No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5180.10515652691134168No Hit

[OK]Adapter Content

Adapter graph