FastQCFastQC Report
Wed 31 May 2023
EGAF00007935759

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935759
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498958
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC37780.7571779588662773No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT36450.7305224086997303No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG33050.6623804007551738No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT31990.6411361276901062No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC28070.5625724008834411No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG25480.5106642242433231No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT19630.39341988704460096No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG19320.3872069392614208No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG18990.3805931561373903No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC17720.35514011199339424No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG17660.3539376059708432No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA14890.2984219112630722No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT14690.2944135578545689No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA14250.2855951803558616No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT11490.2302799033185158No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG10380.20803354190132234No Hit
GTACATGTGCGGACGGTGCGGATGGTTATCGAAACCGTGCGGGT9460.18959511622220707No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG8560.17155752588394213No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8030.16093538935140833No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7270.14570364639909572No Hit
AGATTCAACATCCGTTTCGCTACCGTTGAAGTGCATGTAGGTGG7110.14249696367229306No Hit
GTCGATGCAAGCACCGGAGTTGAAGGTCTGGGTGGCGCTAGAAC6720.13468067452571159No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT6460.12946981509465727No Hit
GTCAATGCACGCGCCAGAGTTGAAGGTCTGAGTAGCAGAGCTGC6100.12225477895935127No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5940.11904809623254863No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5860.11744475486914731No Hit
TTCCAGTTCGGACATACGGTCGTACGGAATAAAGTGGAAGTGAT5540.111031389415542No Hit
GTTCTGGCCCGCGCGGGTGCCAGCATTCCACTGGATAGTACGGG5190.10401677095066117No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)