FastQCFastQC Report
Sun 21 May 2023
EGAF00007935760

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935760
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498958
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA82391.651241186632943No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA40400.8096873885176709No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA37280.7471570753450191No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC37230.7461549869928932No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG33610.6736037902989831No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG33400.6693950192200546No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT32570.6527603525747658No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC22850.4579543769215044No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA20540.41165789505329103No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17620.35313593528914256No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA15980.3202674373394153No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT14790.2964177345588206No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG12500.25052208803145753No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG10640.21324440133237668No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10060.20162017644771704No Hit
GAATGCGACAACTATCGCCAGGAATACGATA9480.1899959515630574No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8810.17656796764457128No Hit
CAGTCCATTGTAAACCGTACTGACCTGGATC8040.1611358070218335No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG7320.14670573475122156No Hit
CTGGAAGAGGTCATCGTAGAAAAAACCAAAC7050.14129445764974208No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5970.11964934924382413No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5970.11964934924382413No Hit
CCGCGTGTCCTGAGCAACTCCGGTTGGGGTC5850.11724433719872214No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC5760.11544057816489564No Hit
TACGCCGACGGTACCATTAGCTCTATCCAGC5710.11443848981276981No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5000.10020883521258302No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)