FastQCFastQC Report
Sun 21 May 2023
EGAF00007935762

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935762
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences568298
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT32110.5650204646153955No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC23430.41228369622979494No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA21590.37990631675634967No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG20490.36055027467983347No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG19640.3455933330752528No Hit
GGTCAGGTGAAACCGGAAGTTAAACCAACCC13790.2426543820319621No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11760.20693368619984584No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG11400.20059898152025873No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG10680.1879295721610845No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10380.1826506515947619No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG8550.15044923614019406No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8280.1456982076305037No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7980.1404192870641811No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG6990.12299884919531655No Hit
AGCACTGTCCCGTACTCCCCGCCGCAGTCCG6360.11191311600603909No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA6020.10593033936420682No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5930.10434666319431003No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)