FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935764

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935764
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505989
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA17190.3397307056082247No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13950.2756976930328525No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11370.22470844227838946No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10100.19960908241088243No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8640.1707547002009925No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7690.15197958848907783No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6370.1258920648472595No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6240.12332283903405016No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6170.12193940975001433No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5110.10099033773461477No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)