FastQCFastQC Report
Sun 21 May 2023
EGAF00007935765

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935765
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522340
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG36120.6915036183328866No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA35910.6874832484588582No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA35160.6731247846230425No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG30070.5756786767239729No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG21830.4179270207144771No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT21300.4077803729371674No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21170.4052915725389593No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC17050.32641574453421146No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT16860.32277826702913814No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG15110.289275184745568No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG14540.278362752230348No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA13890.2659187502393077No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG13760.2634299498410997No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT13160.25194317877244704No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT12720.24351954665543513No Hit
CTGTTCCGGGATCTGCGGCAGCTGCTGACAGCACTGTTGCTGCA12720.24351954665543513No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT12580.24083930007274953No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA12530.23988206915036187No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG11900.2278209595282766No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT11490.21997166596469733No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10990.21039935674082016No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10960.20982501818738752No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT10930.2092506796339549No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT10890.20848489489604474No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG10770.20618754068231418No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC10740.20561320212888157No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10430.19967837041007774No Hit
CGGAGCCTGCGGTGGCGGCGGCTCTTGATAACCCTGATACGGCG9640.1845541218363518No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG9590.18359689091396408No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT9510.18206532143814372No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9380.17957652103993568No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9230.1767048282727725No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT8980.17191867366083394No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT8550.16368648772829958No Hit
GTAACCCTGCGCGATTTTAATCTGAGAGACACCGTATTTATCGG8120.15545430179576522No Hit
GGTACCCAGCTGATTGCGCTCACGTTCCAGCGCTTCAATGTGAC7950.15219971665964696No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7930.15181682429069188No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7880.15085959336830415No Hit
CTGCGGCAGCTGTTGGCAGCACTGCTGTTGCATAACGTGGCAAG7860.15047670099934907No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG7370.14109583795994945No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG7340.14052149940651681No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7330.14033005322203929No Hit
CACATCTGCGCTCGCAGAGATGCCAGCGAAGTAACCGGTTGCAT7190.13764980663935367No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6980.13362943676532527No Hit
TTGCTGCGGAATCTGTGGCAGTTGCTGACAGCATTGCTGCTGCA6920.13248075965845998No Hit
CGGTGCCTGTGGCGGAGGCGGTTCCTGATAGCCCTGGTATGGTG6750.12922617452234178No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6450.12348278898801548No Hit
CAGCTGCTGACAGCATTGCTGCTGCATAACGTGACAGGAAGACT6430.12309989661906037No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6360.12175977332771756No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC6310.12080254240532987No Hit
CACGCTAGACTGCTCGGACGGACCTGGACGTTCTGGGGTAGACT6260.11984531148294215No Hit
AACGCTAGACTGTTCGCTCGGACCAGGACGTTCTGGAGTGGACT6230.11927097292950951No Hit
TTCCTCACCGGCAGCTTTTGCCTGTTCTTCAATGTTAGCAACAA6190.11850518819159934No Hit
CTGCTGCAGTACGTGGCAAGAAGACTGCTGCAGCATCTGGCTAC6120.11716506490025655No Hit
GTGGCAGGAGCTCTGCTGCAGCATCTGGGAGCGTGCCAGACGCT6100.11678217253130146No Hit
CTGCGGCAGCTGCTGGCAGCACTGCTGCTGCATGACGTGGCAAG6080.11639928016234635No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5950.1139104797641383No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5750.11008155607458744No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5730.10969866370563233No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5720.1095072175211548No Hit
GTGCTGGGAACGCGGGGTCCAAGGGCCAGCGTAGCCCGGATAGC5710.10931577133667725No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5660.10835854041428954No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5650.10816709422981201No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5630.10778420186085692No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5620.10759275567637937No Hit
CAGCGGACGCAGATTACCGATTTCACCGTTTTCACCCTGGTCCT5540.10606118620055903No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5480.10491250909369376No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5390.10318949343339587No Hit
CAGGGTCGGAATCTGATGACGGGTTTTGCATGCAACACCGTTCT5270.10089213921966535No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)