FastQCFastQC Report
Wed 31 May 2023
EGAF00007935767

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935767
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498392
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG36480.7319539639480569No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA33640.6749707057898201No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA33590.6739674794137948No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG27630.5543828953915794No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20430.40991829724393647No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG20190.4051028106390151No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT19820.39767893545642785No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT16330.3276537344098621No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC16300.32705179858424693No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG14900.2989614600555386No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG14130.283511773864749No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA13100.2628453105186279No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG13030.2614407935921925No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA12830.2574278880880913No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTGGCT12480.2504053034559142No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT12100.24278078299812197No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT11890.2385672322188157No Hit
CTGTTCCGGGATCTGCGGCAGCTGCTGACAGCACTGTTGCTGCA11370.2281336779081526No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG11310.22692980625692227No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT10410.2088717314884669No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT10390.20847044093805678No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT10210.2048588259843657No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10120.20305301850752017No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC10110.20285237323231514No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10030.20124721103067464No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG9990.20044462992985443No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9590.19241881892165202No Hit
CGGAGCCTGCGGTGGCGGCGGCTCTTGATAACCCTGATACGGCG9500.1906130114448065No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG9250.18559687956468002No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT9200.18459365318865473No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8780.17616655163004222No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8710.1747620347036068No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT8520.1709497744747107No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT8280.16613428786978923No Hit
GGTACCCAGCTGATTGCGCTCACGTTCCAGCGCTTCAATGTGAC8090.16232202764089312No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7780.15610202410953627No Hit
GTAACCCTGCGCGATTTTAATCTGAGAGACACCGTATTTATCGG7760.15570073355912617No Hit
CTGCGGCAGCTGTTGGCAGCACTGCTGTTGCATAACGTGGCAAG7530.15108589222940977No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7420.14887879420215414No Hit
TGGCAGGTCCGGCTGCGGCGGCAGCATTGGACGCGCCGGGGCGG7300.14647105089969342No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7210.14466524342284787No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6840.13724136824026067No Hit
TTGCTGCGGAATCTGTGGCAGTTGCTGACAGCATTGCTGCTGCA6670.13383039856177467No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6660.1336297532865696No Hit
CAGCTGCTGACAGCATTGCTGCTGCATAACGTGACAGGAAGACT6600.13242588163533925No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6510.13062007415849372No Hit
CACGCTAGACTGCTCGGACGGACCTGGACGTTCTGGGGTAGACT6450.12941620250726335No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6420.12881426668164817No Hit
CGGTGCCTGTGGCGGAGGCGGTTCCTGATAGCCCTGGTATGGTG6370.12781104030562287No Hit
CACATCTGCGCTCGCAGAGATGCCAGCGAAGTAACCGGTTGCAT6220.124801361177547No Hit
AACGCTAGACTGTTCGCTCGGACCAGGACGTTCTGGAGTGGACT6150.12339684425111157No Hit
TTCCTCACCGGCAGCTTTTGCCTGTTCTTCAATGTTAGCAACAA5910.11858135764619014No Hit
GTGGCAGGAGCTCTGCTGCAGCATCTGGGAGCGTGCCAGACGCT5900.11838071237098508No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5740.11517038796770412No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5720.11476909741729403No Hit
CTGCTGCAGTACGTGGCAAGAAGACTGCTGCAGCATCTGGCTAC5710.11456845214208897No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5710.11456845214208897No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC5640.11316393521565356No Hit
CTGCGGCAGCTGCTGGCAGCACTGCTGCTGCATGACGTGGCAAG5610.11256199939003837No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5540.11115748246360295No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5510.11055554663798776No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5510.11055554663798776No Hit
TTCTTCGATGGCTTTGATAACGCTGAAGTCGGTAACGATAGCAC5480.10995361081237258No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5340.10714457695950176No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5280.1059407053082714No Hit
TTCACCGCTGGTACGAATGATGTTACGTACTTTAATCATTTTAT5190.10413489783142588No Hit
CAGACGAGAACGTTTGGACAGAGAACGAGTGTAGGAAACGTTGC5190.10413489783142588No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5170.10373360728101574No Hit
CAGCGGACGCAGATTACCGATTTCACCGTTTTCACCCTGGTCCT5150.10333231673060563No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)