FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935770

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935770
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494764
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44690.9032589274886612No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT34820.7037698781641348No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT28540.5768406755544058No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA18500.3739156446305713No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG11000.22232822113169107No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10190.20595677939381202No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9770.1974678836778747No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC8840.17867104316401355No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8580.173416012482719No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA7630.15421493883952753No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6670.13481174863167084No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA6190.12511015352774252No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6090.1230889878810908No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5540.11197257682450622No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5470.11055776087185No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5190.10489849706122516No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)