FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935771

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935771
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445853
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT24590.5515270728244511No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC20020.4490269214292604No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT19790.44386827048376926No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18370.4120192081246509No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13550.30391182744088296No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13500.30279038158316757No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT9990.22406488237154396No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9920.22249485817074235No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8730.195804446757115No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8340.18705716906693462No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8230.18458998817996067No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA8160.18301996397915907No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG7790.17472126463206483No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6950.1558809742224455No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6900.1547595283647301No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6780.15206805830621303No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6710.1504980341054114No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT6620.14847943156152366No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6200.139059286356714No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5600.12560193606412876No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5540.12425620103487024No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5110.1146117666585175No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4930.11057456157074193No Hit
GTAGTTACCCGGCAGGCATTCGAAACGCAGGGTCGGGCTAGACT4540.10182728388056152No Hit
TTCCTCACCGGCAGCTTTTGCCTGTTCTTCAATGTTAGCAACAA4470.10025725967975992No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG4470.10025725967975992No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)