FastQCFastQC Report
Sun 21 May 2023
EGAF00007935772

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935772
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445853
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA41570.9323700861046129No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39210.8794378416204445No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT24110.5407611925903829No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG20000.4485783430861741No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19700.4418496679398815No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17160.38488021836793745No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13710.30750045418557237No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC10320.23146642503246587No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG9250.2074674836773555No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8780.19692589261483046No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8140.18257138563607286No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA8030.1801042047490989No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8020.17987991557755584No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7950.1783098913767542No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7820.17539413214669408No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7600.17045977037274618No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT7460.16731972197114295No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG7040.1578995767663333No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6850.15363808250701466No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6650.1491522990761529No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6220.13950786469980014No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5670.12717196026493036No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5520.12380762269178407No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5140.11528463417314674No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4820.10810738068376796No Hit
TGTCCGCAGCCGCGCGGCGTATCCGTTCGTA4710.10564019979679401No Hit
ACTACCGACCCGGATGCAGCGGCTTCCGCGA4480.100481548851303No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)