FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935773

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935773
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425093
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT23470.552114478478827No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG22540.5302369128637734No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT10220.24041797912456803No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG9240.21736420030440398No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8620.20277915656103487No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA7160.16843373097181089No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7160.16843373097181089No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6560.15431917251048594No Hit
ACGCATTGCGCCGTTAGACGGGTTCAGATAGTACCAAGTGGAAC6310.14843810648493388No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5160.12138520276739444No Hit
CCAGTTAATACCATCGTGACAAGCAGACGCGGACCAGGCTACGC5000.1176213205110411No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4670.10985831335731239No Hit
GTCATCGTCCTCAACAATAATCGGATCATCCGGCAGACGCGGCG4570.10750588694709157No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4270.10044860771642912No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)