FastQCFastQC Report
Sun 21 May 2023
EGAF00007935774

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935774
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425093
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCAGCGGTAATGTTAGCGTTGGTTATAACC24710.5812845659655652No Hit
ATGTCCAACATGGACATCGATGGTATTAACA22390.5267082732484422No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA11000.25876690512429046No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG9620.2263034206632431No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9580.2253624500991548No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8800.20701352409943238No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8470.19925051694570364No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7470.17572625284349544No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7470.17572625284349544No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6590.1550249004335522No Hit
GCTATGCAGACCGGTTGGTACAAAGTAGGCA6480.1524372313823093No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5750.13526451858769728No Hit
CCAAAAGCTGCAAAACCGTGGCTGCGTGCTC5200.12232617333148275No Hit
GGTGCACTGCTGAACGACAAACACTCCAACG5130.1206794748443282No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4910.11550413674184237No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4750.11174025448548906No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA4610.1084468575111799No Hit
GGTCGTTCTGGCTATACTATCCATGTACAGT4430.10421248997278243No Hit
ATCCACGTTCAGTGCAACTCTTCCAAATTCC4420.10397724733176034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)