FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007935776

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935776
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409002
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27230.6657669155652051No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15760.38532818910420974No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13140.3212698226414541No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9160.22395978503772598No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7520.18386218160302395No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7490.18312868885726719No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7080.1731042879985917No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6320.15452247177275416No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6260.1530554862812407No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5420.13251768940005182No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5370.13129520149045726No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4770.11662534657532236No Hit
GCACGTGGTGGTATCCCGCGTCACCTGGTGC4650.11369137559229538No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)