FastQCFastQC Report
Wed 31 May 2023
EGAF00007935779

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935779
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences377229
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15500.4108909972457049No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14630.3878280832067524No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11080.29372079028918774No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG9330.2473298712453178No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7580.20093895220144792No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6830.18105712975407512No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6560.1738996736730209No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6200.16435639889828194No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4770.1264483907652911No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4680.12406257207160637No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4660.12353239013967643No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)