FastQCFastQC Report
Wed 31 May 2023
EGAF00007935780

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935780
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences377229
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47791.2668697263465958No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28170.7467612511233229No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14270.37828480843201345No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11930.31625352239621024No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9990.2648258749990059No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9190.24361859772180824No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8060.21366331856776652No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7290.19325131418846378No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6540.17336949174109095No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5130.13599166554003006No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4900.12989457332283572No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)