FastQCFastQC Report
Wed 31 May 2023
EGAF00007935782

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935782
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences397482
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51071.2848380555597485No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT27710.6971384867742438No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC26240.6601556800056355No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23270.5854353153098757No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21710.5461882550656382No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG19620.49360725768714053No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18210.4581339532356182No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15620.3929737698814034No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14330.3605194700640532No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13360.33611584927116195No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11710.2946045355512954No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11380.28630227280732207No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9020.22692851500193723No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8570.21560724762379177No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7400.18617195244061366No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7290.1834045315259559No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6380.1605104130501507No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6340.15950407817209333No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6170.1552271549403495No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT5780.14541538987929015No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5630.14164163408657499No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5190.1305719504279439No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5170.13006878298891522No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5130.12906244811085785No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5070.1275529457937718No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4740.1192506830497985No Hit
TCCGTAGGCGACGGTGAAACTGTTGAATTTG4610.11598009469611203No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4400.11069683658631083No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4150.10440724359845226No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4110.1034009087203949No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4050.10189140640330883No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG3990.10038190408622276No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)