FastQCFastQC Report
Wed 31 May 2023
EGAF00007935786

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935786
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409864
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA19110.4662522202486678No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG17320.4225791970019323No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15980.38988542540940413No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG14450.35255596978509945No Hit
CGCACCATCTGGGAATCCGCTGCCGATATCG13570.33108543321687195No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12670.30912692990845747No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12600.307419046317803No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12020.2932680108523803No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11330.2764331583159292No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9290.22666055081685632No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC9040.22056096656451896No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7930.1934788124841411No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7020.1712763258056331No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG6600.16102902426170632No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6260.15273358967852751No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5700.13907052095329184No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5420.13223898659067398No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4870.1188199012355318No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG4770.11638006753459684No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4440.10832861632151151No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4320.1054008158803896No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4230.10320496554954814No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT4200.10247301543926765No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA4190.10222903206917418No Hit

[OK]Adapter Content

Adapter graph