FastQCFastQC Report
Sun 21 May 2023
EGAF00007935788

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935788
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415255
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32340.7787985695536477No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14200.3419585555863265No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14110.33979121262838496No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12770.3075218841434781No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12760.3072810682592624No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9450.22757101058385812No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9390.22612611527856374No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7640.18398333554081228No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6680.16086501065610287No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6420.1546037976664941No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5560.1338936316239419No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5220.12570589156060732No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5100.12281610095001866No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4940.11896304680256711No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4590.11053449085501679No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4550.1095712273181539No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4490.10812633201285958No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4450.10716306847599667No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)