FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935790

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935790
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416935
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14500.3477760322352405No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12910.30964059145910033No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12570.30148584311703264No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7350.17628647151234605No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG7050.16909110532816865No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC6690.1604566659071558No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5880.14102917720987684No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5660.13575257534148008No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4870.11680477772314629No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4600.11032894815738664No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4340.10409296413109957No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4330.10385311859162699No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4300.10313358197320925No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4200.10073512657848345No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)