FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935792

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935792
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403579
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16060.39793943688844063No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG14110.3496217593085864No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12440.30824200466327534No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11360.2814814447728945No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8520.2111110835796709No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG6420.15907666157059708No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5600.1387584586908635No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5370.13305945056606017No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4490.11125454991463878No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4460.11051120102879486No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4360.10803337140931515No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4310.1067944565995753No Hit
AACGCATTCCGTCTGAAGAGCCTGGCTAAAT4270.10580332475178342No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)