FastQCFastQC Report
Sun 21 May 2023
EGAF00007935798

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935798
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences374748
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48101.2835291982879162No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35370.9438342566204491No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10170.27138236895193574No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6110.16304289816089745No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4660.12435023002124095No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4230.11287585257292901No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4100.10940685473971844No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG4050.1080726248038682No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)