FastQCFastQC Report
Wed 31 May 2023
EGAF00007935799

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935799
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418799
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20980.5009563060083716No Hit
ACCCGGGTCACCCTTATCGCCTTTGTCGCCTTTCGCGCCTACCA11290.26958039536866135No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10660.25453737950663685No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9510.2270779061077032No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9450.22564523793036756No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8250.1969918743836542No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6450.1540118290635842No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5700.13610347684688837No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5580.13323814049221702No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)