FastQCFastQC Report
Wed 31 May 2023
EGAF00007935800

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935800
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418799
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63731.5217323823600342No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20720.49474807723991704No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16750.39995319950620706No Hit
GTGAGCGATGCCGTCGCTAACGGCCTGAAGG11170.26671505901399No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10550.25191082118152147No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9490.22660035004859136No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9100.2172880068959095No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5860.13992392531978348No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5770.13777492305377997No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4740.1131807860095177No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4370.10434599891594774No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4340.10362966482727991No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)