FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007935802

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935802
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419271
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA47401.1305337120859777No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30040.7164817027650374No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA21820.5204271223146842No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17890.42669299808477096No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17000.40546567733041394No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15340.36587314648520886No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13490.32174894042278146No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13400.31960235742514986No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13020.3105390069907053No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12010.2864495755728395No Hit
CCGGCTCTGGGCGCTCGTCGTAAGAAAAAAA11230.2678458562600323No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10970.26164461648909654No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8540.20368687555304327No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8230.19629308967231218No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7560.18031297180105468No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG6880.16409434470783812No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6880.16409434470783812No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC6810.16242478015412468No Hit
TCCGAGCGTTATCTGGGTTACCTGGAACAGC6590.1571775772710252No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6500.15503099427339356No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6340.1512148467220485No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6250.1490682637244169No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6220.14835273605853969No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6170.14716018994874436No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6050.14429807928523555No Hit
GCCAAACCGGTAGCGGTTCGCTCTCCGGCAC5790.13809683951429982No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA5640.13451920118491384No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA5570.13284963663120036No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5180.12354777697479671No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5170.12330926775283765No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAA5050.12044715708932885No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5020.11973162942345167No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5000.11925461097953352No Hit
CTGGTTGCCTCTTCTGACGGTACCAGCAAAA4850.11567697265014752No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4770.11376889887447499No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)