FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935804

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935804
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences385428
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45391.1776518571562005No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA28350.7355459385410504No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG18820.4882883443859813No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12170.3157528773207966No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12110.31419616633975733No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11130.2887698869827828No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10070.2612679929844225No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9320.24180910572143177No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9250.23999294291021928No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8450.2192367964963625No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8280.21482611538341792No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6940.1800595701402078No Hit
GGCGCCGAAACCGAAGAAGGTGGTGACGATC6480.1681247859522401No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6430.16682752680137405No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6170.16008177921687058No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC5640.14633083221769047No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5080.1318015297279907No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4410.11441825710638562No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG3920.10170511742789834No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)