FastQCFastQC Report
Sun 21 May 2023
EGAF00007935806

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935806
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences398129
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT48251.2119187499529047No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29740.746994064737811No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13470.33833255050498706No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12520.31447093781161384No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12360.31045213988430886No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10690.2685059365180632No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10630.26699888729532384No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10060.2526819196792999No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9640.24213257512012437No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8850.2222897603540561No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8470.21274511527670678No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7330.1841111800446589No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6860.17230596113320054No Hit
GGCGCCGAAACCGAAGAAGGTGGTGACGATC6500.16326366579676438No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC6340.1592448678694594No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6060.1522119714966757No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5200.1306109326374115No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4130.10373522149855952No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4050.10172582253490701No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)