FastQCFastQC Report
Sun 21 May 2023
EGAF00007935807

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935807
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences355733
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18040.50712191446956No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG17480.4913797707831435No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG17310.48660090573548137No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG13770.38708806886063424No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11650.3274928106192003No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG11330.31849729994124804No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG11260.31652953198044603No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10900.3064095824677497No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG10350.29094854849001917No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG9540.26817866208645247No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8690.24428433684814174No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8000.2248877669488071No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7860.22095223102720302No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA7590.21336226889268076No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG7350.20661563588421653No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7220.2029612096712984No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7160.20127455141918235No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG6390.17962910385035968No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6190.17400690967663948No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG6060.1703524834637214No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG5790.16276252132919913No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG5560.15629699802942096No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG5450.15320479123387484No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5190.1458959388080386No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5180.1456148290993526No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG5110.14364706113855055No Hit
ACGCGCGCGGATAAATTTACGAACGCCTTCGGCAGAATCAGTGG5080.14280373201249252No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG4640.13043490483030812No Hit
GTCAACCAGGGACACGGTTTCGCCGGTAAACAGTGGGCTGAAGC4510.12678047861739No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4440.12481271065658796No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4400.1236882718218439No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG4360.12256383298709989No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4110.11553609026994965No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)