FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935808

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935808
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences355733
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG54331.5272690472910864No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18420.5178040833996284No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17500.4919419902005156No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG16870.47423207855329697No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG13580.38174698439560006No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13050.3668481698352416No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11440.3215895067367942No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG11360.3193406290673061No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11360.3193406290673061No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11350.3190595193586201No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC11100.31203177664146986No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11090.31175066693278386No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10930.30725291159380774No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG9920.2788608310165208No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8980.252436518400036No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8040.22601220578355113No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7840.22039001160983096No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7240.20352342908867044No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC7000.1967767960802062No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6990.1964956863715202No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG6610.1858135174414519No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6540.18384574948064983No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6170.17344469025926748No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG5920.16641694754211725No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5830.1638869601639432No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5710.16051364365971107No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG5630.15826476599022302No Hit
GGTGAACTGGCTGCATCTGCGGCATCCCTGA4850.13633820871271432No Hit
TTCGGTGCACTGTACAGCGGTCGTATCGCTG4820.1354948795866563No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4810.13521376987797026No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG4500.126499368908704No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4400.1236882718218439No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4170.11722274852206571No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC3920.11019500580491548No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT3780.10625946988331136No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA3600.1011994951269632No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)