FastQCFastQC Report
Wed 31 May 2023
EGAF00007935809

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935809
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423331
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG25660.6061450732405611No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT22450.5303178836418784No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA10930.25819039947464273No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8610.2033869478020745No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7390.174567891319086No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG6380.15070949209956275No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5870.13866218160257576No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5470.12921331062454675No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)