FastQCFastQC Report
Wed 8 May 2024
EGAF00007935811

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935811
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences383454
Total Bases16.8 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG24690.6438842729506017No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG22450.5854678788068451No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22050.5750363798526029No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20720.5403516458297475No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18710.48793336358468026No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG18660.4866294262154No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG18240.4756763523134456No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG17600.4589859539866581No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15560.4057853093200227No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG15160.3953538103657805No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT14850.38726939867624277No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG14780.38544388635925037No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG13710.35753962665665245No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG13620.3551925393919479No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13040.3400668659082967No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG11720.3056429193592973No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA11470.2991232325128959No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG11220.29260354566649455No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG10590.276173934813563No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG9530.24853046258482112No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9330.2433147131077No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG8110.2114986412972612No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7990.20836919161098855No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT7820.2039358045554356No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7510.19585139286589787No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG7350.19167879328420095No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG7060.18411595654237536No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6760.1762923323266937No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG6590.17185894527114073No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6330.1650784709508833No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG6240.1627313836861788No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG6190.1614274463168985No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG6150.16038429642147428No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG6120.15960193399990613No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG6050.15777642168291373No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG5920.15438618452278502No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT5570.14525862293782305No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG5550.14473704799011095No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5540.14447626051625487No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5540.14447626051625487No Hit
CGGGCACTGCGGAACGGTCAGGTACAGGCCGCGACGTTTTTCCG5530.14421547304239882No Hit
CGGGGTCAGGCGAGGCTGGGACAGCGGAGACAGAATGGTCGGCG5400.14082523588227008No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5320.13873893609142166No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG5250.13691342377442928No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG5060.1319584617711642No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5020.13091531187574No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG4810.12543877492476282No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4720.12309168766005832No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4660.12152696281692198No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG4570.11917987555221747No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT4480.11683278828751298No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT4330.11292097617967213No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4290.1118778262842479No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4060.10587971438555863No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT3930.1024894772254299No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG3890.10144632733000568No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA3870.10092475238229358No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)