FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007935814

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935814
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences360726
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG54561.5125053364603604No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38851.0769947272999452No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23170.6423157742996068No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20170.5591501582918892No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17570.4870732910852004No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15820.4385600150806984No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13750.3811757400353731No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13120.36371096067375236No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC12410.34402843155192586No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10970.3041089358682213No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10840.3005050925078869No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC10280.2849808441864462No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9680.26834772098490267No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8600.2384080992221243No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8600.2384080992221243No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC8420.23341816226166123No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7700.21345841441980895No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7590.21040900849952593No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7070.19599363505818818No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6580.18240991777692764No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6550.18157826161685045No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6030.16716288817551272No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6020.16688566945548697No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5990.1660540132954098No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5480.15191585857409778No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4760.13195611073224553No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4640.12862948609193683No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4390.12169901809129366No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4330.12003570577113931No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4230.11726351857088205No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4090.11338245649052188No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC4060.1125508003304447No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4060.1125508003304447No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC3910.10839251953005884No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC3830.10617476976985303No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT3780.1047886761697244No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT3610.10007595792928706No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)