FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935815

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935815
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418397
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT44751.0695583381333995No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC42661.0196057811121972No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT35380.8456083576125067No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA30300.724192573082503No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA22860.5463710303850171No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA18840.4502900355404078No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18460.4412077524456437No Hit
GTCTGGGCCATCTTCACCCGGGCGACGATGTACACGGTGACGGC16620.39723038167099667No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT15900.3800218452809174No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15360.36711544298835797No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC14950.3573161375440072No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT14470.3458437799506211No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA13840.3307863106093017No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT13770.3291132584602662No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA12400.2963692378291431No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12340.29493519312996985No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA12300.293979163330521No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGACGGC12200.29158908883189893No Hit
GTCTTCCGGGCCTTCCTCACCCGGGCGACGGTGCGCGCGGTGAC12200.29158908883189893No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC12050.2880039770839657No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT11960.2858529100352058No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11430.27318551519250855No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10990.2626691873985712No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9890.2363783679137279No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9620.22992516676744812No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG9480.22657906246937717No Hit
GTGACGACGGCGGCGTTCACCGCCGTCCGGACCTTCGCCTTCAC9170.2191698315236486No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9170.2191698315236486No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT9020.21558471977571542No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8420.2012442727839827No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT8140.1945520641878407No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC8100.19359603438839187No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA7910.18905489284100985No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7630.1823626842448679No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7570.18092863954569466No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT7430.17758253524762369No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7280.17399742349969047No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7160.17112933410134393No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7100.16969528940217068No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG7000.16730521490354855No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6870.1641981180553398No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG6590.15750590945919785No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6560.1567888871096112No Hit
GTCAGTGCCGAAGGACTGACGCAGCTTGGTGCGAACCTGGTTTG6490.15511583496057574No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6420.15344278281154022No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6370.15224774556222917No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG6360.15200873811236695No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6350.15176973066250476No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6310.1508137008630559No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC6180.14770660401484714No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC5980.1429264550176029No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5660.13527821662201212No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5610.13408317937270106No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG5550.1326491346735278No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5270.12595692607738584No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5020.11998173983083053No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG4980.11902571003138168No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4930.11783067278207061No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC4890.11687464298262176No Hit
GGACTGGTCCGGCACGTGCAGAACCGGCAGGTGCATGCGAGGCG4760.113767546134413No Hit
TTCCTGGCCCTCTTCGCCTTCATCACCATCGCCACCTTCGTCGC4690.11209449398537753No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4630.11066044928620426No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG4500.10755335243799549No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG4440.10611930773882221No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4380.10468526303964894No Hit
ACCACCGCCACCACCGCCGCCGTCCGGGCCCTCAGCTTCACCTT4360.10420724813992452No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)