FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935820

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935820
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences375071
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25130.6700064787733523No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24790.6609415284039555No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG18100.4825752990767081No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16060.42818559686032776No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15870.423119889300959No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14230.37939483457798656No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9930.2647498740238515No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9070.24182088191302448No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8740.23302254773096293No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6740.17969931026392336No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6260.16690173327183386No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6130.1634357228364763No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5840.15570385340375553No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5630.15010491346971638No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5290.14103996310031966No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5150.1373073364776269No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5080.1354410231662805No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5040.13437455841693974No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA4720.1258428404222134No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4600.12264344617419101No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4440.11837758717682786No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4360.11624465767814628No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)