FastQCFastQC Report
Wed 31 May 2023
EGAF00007935823

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935823
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380683
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA30090.7904214267513915No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA27310.7173947877893155No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19130.5025178429296817No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA14440.37931822540013604No Hit
GGCACCAACGAACGCACGCACAGCGGATGCGGTTACGTCCTGCG13390.35173622147561096No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC12020.3157482734978972No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG11390.2991990711431821No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9410.2471872923140776No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8270.21724111662459314No Hit
CTGCTGACGCGGACGCGGGCGGAACGGACGACGGTAACGTGGAC8100.21277545884633675No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7780.20436951479314813No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6840.17967705413690654No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6680.17547408211031226No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6380.16759350956044794No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6220.16339053753385363No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6010.1578741367489486No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5350.1405368771392471No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5240.1376473338709635No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4790.12582647504616704No Hit
AGATGGCGCGTTGGAAGTAACTTTGTTGTTGGTGTCATCGGCGG4560.1197847027579377No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4460.11715784524131627No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4380.11505635922801911No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4370.11479367347635697No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA4280.11242950171139766No Hit
ACGGTGCGCACGGGTGATAACGTCGTGGTCATCGGAACGGTCGT3810.10008327138327691No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA3810.10008327138327691No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)