FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007935824

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935824
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences380683
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT65001.7074573858039364No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58681.5414399907534615No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18810.49411189887649304No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC15060.395604742003189No Hit
ATGATGGCTCGTCGCACCGTTGATTTCAAAA13790.3622436515420967No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC11960.31417215898792433No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11040.29000506983500707No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG10510.27608272499691344No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8550.2245963176711332No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8230.21619037361794458No Hit
CGTCCGCCGAACCAGCAGCAGCCGATCGAGG8180.21487694485963385No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8080.21225008734301246No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7600.19964117126322953No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6750.17731288237194728No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6270.16470396629216436No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5940.15603533648731358No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5530.1452652206691657No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5030.13213093308605847No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG4920.12924138981777492No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4370.11479367347635697No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4350.11426830197303267No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG4250.11164144445641123No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4080.10717578667815478No Hit
GAAAACGTACTGATCGAGCTGAGCGATTCCT4070.10691310092649263No Hit
CATTCTAACGATCAGCACGCGGGTGATCACA4030.10586235791984408No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)