FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935827

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935827
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468115
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT22580.48236010382064237No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC17910.3825982931544599No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15370.32833812204266044No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG15290.32662914027535966No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13770.29415848669664507No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12920.27600055541907437No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC12740.2721553464426476No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC12610.2693782510707839No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12430.2655330420943572No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12110.2586971150251541No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9480.20251433942514124No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9150.19546478963502556No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC9060.19354218514681223No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG8600.18371553998483278No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG8590.1835019172639202No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG8400.17944308556658087No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7760.1657712314281747No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT6970.1488950364760796No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6750.14419533661600248No Hit
GAAGATGCTCGGACCGATACCAGTCCAAGACGGACGGTACTGAA6260.13372782329128524No Hit
CTGCATCTGCACACCCATACGTTTCTGGTAGGCTTGCAGGTTCT6220.13287333240763488No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6170.1318052188030719No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6130.13095072791942153No Hit
TCATTTGAAACGCTGCATCTGGACGCCCATACGTTTCTGGTAGG6110.13052348247759632No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG6030.12881450071029554No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5980.12774638710573255No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5970.12753276438481997No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5730.12240581908291766No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5630.1202695918737917No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5500.11749249650192795No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5430.11599713745553976No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5060.10809309678177371No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5000.10681136045629813No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4940.10552962413082256No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4830.103179774200784No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)